cellfish.data.get_markers

cellfish.data.get_markers(adata, groupby, key='rank_genes_groups', p_val_cutoff=0.05, logfc_cutoff=0.5)

Extract marker table from adata.uns[key] (scanpy rank_genes_groups).

Return type:

DataFrame

Parameters:

• adata (AnnData)

• groupby (str)

• key (str)

• p_val_cutoff (float)

• logfc_cutoff (float)