cellfish.io.write_h5_safe

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cellfish.io.write_h5_safe#

cellfish.io.write_h5_safe(obj, filename, *, mode='inplace', numeric_threshold=0.95, **write_kwargs)#

Sanitize metadata and write AnnData/MuData to disk.

For AnnData, this calls .write_h5ad. For MuData, this calls .write (h5mu output path).

Return type:

Union[AnnData, MuData]

Parameters:

  • obj (AnnData | MuData)

  • filename (str)

  • mode (Literal['inplace', 'copy'])

  • numeric_threshold (float)

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