cellfish.plot.embedding_numbered

cellfish.plot.embedding_numbered(adata, basis, *, color=None, legend_title=None, legend_number_start=1, legend_style='default', legend_groupby=None, legend_group_order=None, legend_columns=None, legend_marker_map=None, legend_edge_palette=None, legend_ncols=None, legend_scale=1.0, legend_density=1.0, legend_panel_width=0.92, legend_panel_pad=0.035, legend_badge_edgewidth=0.0, legend_badge_edgecolor=None, **kwargs)

A derived version of embedding() that: - writes numeric indices (1..N) on the embedding (at per-group centroids), - and shows a right-side legend with "<idx>  <group>" labels.

Notes: - Intended for categorical color (i.e. adata.obs group labels). - legend_title controls the legend title (e.g. “Cell type”). - Legend layout is controlled by legend_fontsize / legend_scale / legend_density.

Return type:

Union[Figure, Axes, None]

Parameters:

• adata (AnnData)

• basis (str)

• color (str | Sequence[str] | None)

• legend_title (str | None)

• legend_number_start (int)

• legend_style (str)

• legend_groupby (str | Mapping[str, str] | None)

• legend_group_order (Sequence[str] | None)

• legend_columns (Sequence[Sequence[str]] | None)

• legend_marker_map (Mapping[str, str] | None)

• legend_edge_palette (Mapping[str, str | tuple[float, ...]] | None)

• legend_ncols (int | None)

• legend_scale (float)

• legend_density (float)

• legend_panel_width (float)

• legend_panel_pad (float)

• legend_badge_edgewidth (float)

• legend_badge_edgecolor (str | tuple[float, ...] | None)