cellfish.plot.get_cluster_proportions

cellfish.plot.get_cluster_proportions#

cellfish.plot.get_cluster_proportions(adata, cluster_key='cluster_final', sample_key='replicate', sort_key=None, drop_values=None)#

Return percent composition (0–100) with samples as index and clusters as columns.

Return type:

DataFrame

Parameters:

  • adata (AnnData)

  • cluster_key (str)

  • sample_key (str)

  • sort_key (str | None)

  • drop_values (Sequence[str] | None)